Scaffold Ga0208465_1002539

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1002539
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3409
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F029725	Metagenome / Metatranscriptome	187	Y
F055691	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_100253910	F055691	GGA	MSTYISPLTSKVYEIVETSHTRNAWDSEGNLTPYVQSVFEIYHEGRKVQFALSQDRIADSVAHYENPGPDISSRYD
Ga0208465_100253913	F005089	GGA	MNITDLFDSIKLSEQLALENYQQRNGVVDYRLPGVCNHYFAKYDLQGQRDGEICLTCKVSKTVKGQLRYTFQIDGKRIAEKQIPAEFNLLGAFAH
Ga0208465_10025392	F029725	GGAG	MTNRTELEWFLKEKCREDVDLFDTIISEYVWNLSDSKLTELEDFLANNFGDD