Scaffold Ga0208465_1001758

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1001758
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4414
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_10017581	F000450	GGCGG	MGDRANFGFVQPNGNTIVLYGHWAGNQMLARLAEAVFKARPRWNDPSYATRITISQMVADDWNSETGWGLHVNEIGDNEHKVAIVDFEQQTFSLHEEAPHNDLDNKVRGMN
Ga0208465_10017585	F000980	N/A	MTKYQKYTWICTSDCDALIEYTFKDGYGWPNGVTDLTCRCGTSCTLLSVEDATIPYTDSPLPKEERMETETPAVTIPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLQGKIDAVKEIICEAYADSQDQDTLRDIAEALGIELIKEVQFTASVEVSGTYSYDILSDYSDYDLDSVITDALFADSNDGNVQVDDTEVCNVREA