Scaffold Ga0208465_1001074

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208465_1001074

Scaffold Ga0208465_1001074

Overview

Basic Information
Taxon OID	3300020570 Open in IMG/M
Scaffold ID	Ga0208465_1001074 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6179
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005585	Metagenome / Metatranscriptome	395	Y
F005878	Metagenome / Metatranscriptome	387	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_10010746	F005878	GGA	VGVSEVINEMHPFKCGPCKKVTPHFYITKYESEIEPDAWVWLMECQNCFEQRLFDPIDRVISREDEITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI
Ga0208465_10010748	F005585	AGGGGG	MAIRDTIYYAFTKSRGYSVFSSETQLTWRCYLSRRNSQEWWKVQSAKIRISISLDTPLSWADADFQHQKIGTTLSLTRNHNQHQWCDYCKMRWGQLKDGTWHHKAQVPAVWKVQSETPTRRMQVRFYCQACANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS

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