Scaffold Ga0208465_1000911

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1000911
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6970
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F004722	Metagenome	426	Y
F009141	Metagenome / Metatranscriptome	322	Y
F090297	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_100091114	F004722	N/A	MSRARTGRELVMEWLMREIRAAKTADLQRAAAFLEWARDVRKGCAKQRGGARVAQANAWRKRVDDDVRW
Ga0208465_10009112	F001841	GGA	MGHFTPPNFFLGLMRFAAWVFWRDPVKPEPPQPKRPRKPTLGYTVGDIPYELLAVVRVSWYRKGVAYEVEEYQIEESDDAPKQFHYIVGTALRQGADVCVLTQYEPEALGVQQ
Ga0208465_10009114	F090297	N/A	MHEPFQAKVANTDLSPWYYAVGWAKHSLQLQITRYKGLGLNTSYEEKQVEKLVELEQFLKMSWDQWMDSLLPDETAQEVK
Ga0208465_10009117	F009141	AGGA	MTEASMVPFYRSYLLGGKLVYLDKLSELSDSELNMLNIETMASLEEARRDYDGIENKQSEEGGSVYRRLKVAGYFQAAIKLELQN