Scaffold Ga0208465_1000650

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1000650
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8859
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F002071	Metagenome / Metatranscriptome	596	Y
F007470	Metagenome / Metatranscriptome	350	Y
F029721	Metagenome / Metatranscriptome	187	Y
F038643	Metagenome / Metatranscriptome	165	Y
F047643	Metagenome / Metatranscriptome	149	Y
F091920	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_100065011	F091920	N/A	MRNRFRIEIYDANKANDITIYSEQGVDKDYLTELVFSNLSNFSGAIKAYVYDELKKKKTVALFIHETTVDKYKRKQLTRLELGLI
Ga0208465_100065013	F002071	AGGA	MLEIGQTYTTTQSGIVGIVKAIDNHPSGVNRILLDVNGKERWTSAPAN
Ga0208465_100065016	F038643	AGG	MTDTTNWAKYPFTVDGVEFVSLLDPNGSMYQQVSRIPASLFTTMNEGAIREIVGKVSLMSKSEIQAELDRVNDGYSQAYLALA
Ga0208465_10006502	F000450	AGGCGG	MGDRANFVFVQPSGETIVLYGHWAGHNMLEHLGEAVAKAQSRWTDPSYATRIAISQMIGDGWGGETGWGLQVNEISDNEHKIPVINWLDQTFSLHEEDSHYNESNKVRGMKNDAIFTMDLRTFVEKYTDAKLLV
Ga0208465_100065022	F029721	AGGA	MRTYSIEDLLVGQFYRPTSYARRFFGGEINFAEKRDDVWVGTDYQAYSIRYRVGQSVKNEWATIAVKVADL
Ga0208465_100065023	F000447	AGGA	MGFIEFARIDENGVEWVNLENATNDELLDFEIALFQEGAL
Ga0208465_10006504	F007470	AGGAG	MDYQDGFEDGVKFAREVIVNNIRLWAETSEDGQAYDDIADRIEFGTVDYDL
Ga0208465_10006505	F047643	N/A	MYYQLQAPTSAACKAAYWEAEFSGLDPYYIESNVFELGTGNIEKVSALISKYSLDILVESDYQPTGYTRR