Scaffold Ga0208465

Basic Information
Taxon OID	3300020570 Open in IMG/M
Scaffold ID	Ga0208465_1000195 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020570 Open in IMG/M

Scaffold ID

Ga0208465_1000195 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19365
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (42.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19365

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (42.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F010688	Metagenome / Metatranscriptome	300	Y
F014610	Metagenome / Metatranscriptome	261	N
F018915	Metagenome / Metatranscriptome	232	Y
F020137	Metagenome / Metatranscriptome	225	N
F048263	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_100019513	F001272	N/A	MIKIELTQEQFNTVLQLIDIAIKAGGYQNAKVAVPIVEVLISQAENPKASE
Ga0208465_100019516	F018915	AGAAGG	VNWIYQILKALLDWLRETPPTDVQHGKAPEALKNDLADRIAGLPRLPDDQGGPGPFR
Ga0208465_100019520	F020137	N/A	MTAHPTIIEAAQLLRQHWPTCSTWNNDQLLNWIGLFNAKKLIGIVKNDEGKCVGVGAVRFLNSIEESEDLNNNFPDGHIAWIEIAIGTEPHAVQTLWVAMMGLCSKNVTKLGGFRKGISRLYDFDRYSKLLMNRRISYGRII
Ga0208465_100019523	F048263	GGAG	MAFENFLQNAANFATGGLYNELSGRDKELERQKMAEVEAFRANPELVREAAKYDPSIMERLGNLLTGGLYGKATGMDDKLEQRALAMQQIREDELQRRMMERMKGYGIAPVEEPMGSELNPDRSAAPMPVAPGTIRKKNTFAGGY
Ga0208465_10001957	F010688	N/A	MVIAVSPKGYHRAIGGTPSHSACGCEEADNNAPMISIPVEALSTDMEDGQQAMPEVGDEVVLEEVRGVLKKLENGEAYVEIRSVNGMPAEYESKGDKGMEKEGPMDEKGMRDMVAEYDSEMES
Ga0208465_10001958	F014610	GGA	MPIYTFESNGKSIEHIAPMGTDSIVLDGKRWSRQPVARFGVTGFAREAELKDYVKKGFSRMEDRQGSRFESTFSKNQIRKIWDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208465_1000195

Overview

Ecosystem & Geography

Associated Families

Sequences