NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1000081

Scaffold Ga0208465_1000081


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1000081 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32720
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (81.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003378Metagenome / Metatranscriptome490Y
F022860Metagenome / Metatranscriptome212Y
F027495Metagenome194Y
F033780Metagenome176Y
F056573Metagenome137Y
F060870Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0208465_100008110F060870GAGGVDSNAALIVAAAVTAVGGIVVAIIQQFRRENHTDHQVVVGLLQVLRKSQQRVEDKVDRVDERLDKHIEFHAEQGILDNGRAVKQTRVKGNSDLSA
Ga0208465_100008113F033780N/AMVKRMTAEELTRCPWSLVAVHWIDAFDSQNGWINTKEYKAKPQHVISVGWLWPDLLEGYVSVTCSWCPDEEPEMETVGMVTHIPTGMVQKVVVLGEPDWVAKRIRTP
Ga0208465_100008143F056573N/AMSIFRPPTDDFVSLAIPPKEFDSQEKRLAFNLFRYFDNEPRGRNVFLLSDGTYTENEPNDITTITKVYWGGSENQVTEAEVASLTAAGYGEYIS
Ga0208465_100008144F027495GGAGVKHRETHPTLDVEGCFACRVSHFRVSGAATPTRHNVAQLNSKERALDKDLDAYKRIRKTGGQPMKIDGSAKLEKIAD
Ga0208465_10000817F022860AGGAMKKFLSYVTENSWTLAGTGLVLITLSGPTLKQALWITGVALVLHSLLTFTIGEDSE
Ga0208465_10000818F003378GAGMEVANKTVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLAAASTDGELTSEEIAEAFGKK
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