Basic Information | |
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Taxon OID | 3300020570 Open in IMG/M |
Scaffold ID | Ga0208465_1000051 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40019 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (79.69%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000635 | Metagenome / Metatranscriptome | 970 | Y |
F001459 | Metagenome / Metatranscriptome | 690 | Y |
F002009 | Metagenome / Metatranscriptome | 604 | Y |
F003112 | Metagenome / Metatranscriptome | 506 | N |
F004760 | Metagenome / Metatranscriptome | 424 | N |
F010603 | Metagenome / Metatranscriptome | 301 | Y |
F039992 | Metagenome / Metatranscriptome | 162 | N |
F053126 | Metagenome / Metatranscriptome | 141 | Y |
F055684 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208465_10000512 | F001459 | N/A | MRKLKAILSFIRNQEWVDEPKWEDEDEKAWTAFLGTPTGKRISLILLNLTLRQNSSAVMKEGQKLAEACGYAKGFRGCVAVLESLATQKLNSAISGYGDGSDEPVAD |
Ga0208465_100005133 | F002009 | GGA | MTPPTIEELGKAAEDITWRVMGKGSEKSAYGEWFNVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNNGETAADHLERALVRALFAWAQIKKEVPRL |
Ga0208465_100005147 | F000635 | AGGAG | MTLSEIAQYAGEKVGKTDSETLTFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVSYDQSEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGIAQLDLYPRLETAGTISLRVVEKLKCLTRTNLIVDFPPTTQALDDELRLPHVHQVVLSLTHADALERERQYAKAQSVVQTANADLAAMANYELSQVGGIKQITPSSLGDLTTEEITAS |
Ga0208465_100005148 | F055684 | AGGAG | MWITSTNNIIRQPQGIRIDDVNHPASIFWCWSKEQLAEIGIKPYHPASVPAGERVTGAYTEEVDGEVYERFNTEPIPQPEEPVNDPV |
Ga0208465_100005152 | F039992 | GGAGG | VSLDEIHDLREKFGSMSERLARMEERQVTLIGMVERSLSSFGDLSNRVTSLEHLKTKMLLVAGSIGAIVSVVWDAIRSRLTNGG |
Ga0208465_100005153 | F003112 | N/A | MIKPLAIWLTNLSLRFLMTQKEYACFKEALRFAGENNTVARETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES |
Ga0208465_100005160 | F010603 | AGGAG | MASEFQRSPIKAKNKAVRIDGQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS |
Ga0208465_100005161 | F004760 | AGGAG | MPIYQYEDTRNGSVVELEKPVAERDSVPGYLKRFQVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSRYTPDNIKRAAAQRR |
Ga0208465_10000519 | F053126 | N/A | VENPPEELPEKSKNGKVAFTKEIEEKCLAACSSGFTLEKCAGLVGVPVGTIKTWVHRNPAFGRKMETARKNHELKLLRDIELAGEKSWQAKAWMAERVYSYAQPSARLQVSGGVEHTAGGSFAALLAGLASRRAEKKAQVIDSQEVKQIEDVKGKYNSYCATDSPQPIATTMPKNPGKPRPLRMRRRKPRQESLKKWPVHDTPTPTPPATDSHA |
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