NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208465_1000051

Scaffold Ga0208465_1000051


Overview

Basic Information
Taxon OID3300020570 Open in IMG/M
Scaffold IDGa0208465_1000051 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40019
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (79.69%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F001459Metagenome / Metatranscriptome690Y
F002009Metagenome / Metatranscriptome604Y
F003112Metagenome / Metatranscriptome506N
F004760Metagenome / Metatranscriptome424N
F010603Metagenome / Metatranscriptome301Y
F039992Metagenome / Metatranscriptome162N
F053126Metagenome / Metatranscriptome141Y
F055684Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208465_10000512F001459N/AMRKLKAILSFIRNQEWVDEPKWEDEDEKAWTAFLGTPTGKRISLILLNLTLRQNSSAVMKEGQKLAEACGYAKGFRGCVAVLESLATQKLNSAISGYGDGSDEPVAD
Ga0208465_100005133F002009GGAMTPPTIEELGKAAEDITWRVMGKGSEKSAYGEWFNVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNNGETAADHLERALVRALFAWAQIKKEVPRL
Ga0208465_100005147F000635AGGAGMTLSEIAQYAGEKVGKTDSETLTFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVSYDQSEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGIAQLDLYPRLETAGTISLRVVEKLKCLTRTNLIVDFPPTTQALDDELRLPHVHQVVLSLTHADALERERQYAKAQSVVQTANADLAAMANYELSQVGGIKQITPSSLGDLTTEEITAS
Ga0208465_100005148F055684AGGAGMWITSTNNIIRQPQGIRIDDVNHPASIFWCWSKEQLAEIGIKPYHPASVPAGERVTGAYTEEVDGEVYERFNTEPIPQPEEPVNDPV
Ga0208465_100005152F039992GGAGGVSLDEIHDLREKFGSMSERLARMEERQVTLIGMVERSLSSFGDLSNRVTSLEHLKTKMLLVAGSIGAIVSVVWDAIRSRLTNGG
Ga0208465_100005153F003112N/AMIKPLAIWLTNLSLRFLMTQKEYACFKEALRFAGENNTVARETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES
Ga0208465_100005160F010603AGGAGMASEFQRSPIKAKNKAVRIDGQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0208465_100005161F004760AGGAGMPIYQYEDTRNGSVVELEKPVAERDSVPGYLKRFQVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSRYTPDNIKRAAAQRR
Ga0208465_10000519F053126N/AVENPPEELPEKSKNGKVAFTKEIEEKCLAACSSGFTLEKCAGLVGVPVGTIKTWVHRNPAFGRKMETARKNHELKLLRDIELAGEKSWQAKAWMAERVYSYAQPSARLQVSGGVEHTAGGSFAALLAGLASRRAEKKAQVIDSQEVKQIEDVKGKYNSYCATDSPQPIATTMPKNPGKPRPLRMRRRKPRQESLKKWPVHDTPTPTPPATDSHA

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