Scaffold Ga0208465_1000051

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1000051
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40019
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (79.69%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F039992	Metagenome / Metatranscriptome	162	N
F053126	Metagenome / Metatranscriptome	141	Y
F055684	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_10000512	F001459	N/A	MRKLKAILSFIRNQEWVDEPKWEDEDEKAWTAFLGTPTGKRISLILLNLTLRQNSSAVMKEGQKLAEACGYAKGFRGCVAVLESLATQKLNSAISGYGDGSDEPVAD
Ga0208465_100005133	F002009	GGA	MTPPTIEELGKAAEDITWRVMGKGSEKSAYGEWFNVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNNGETAADHLERALVRALFAWAQIKKEVPRL
Ga0208465_100005147	F000635	AGGAG	MTLSEIAQYAGEKVGKTDSETLTFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVSYDQSEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGIAQLDLYPRLETAGTISLRVVEKLKCLTRTNLIVDFPPTTQALDDELRLPHVHQVVLSLTHADALERERQYAKAQSVVQTANADLAAMANYELSQVGGIKQITPSSLGDLTTEEITAS
Ga0208465_100005148	F055684	AGGAG	MWITSTNNIIRQPQGIRIDDVNHPASIFWCWSKEQLAEIGIKPYHPASVPAGERVTGAYTEEVDGEVYERFNTEPIPQPEEPVNDPV
Ga0208465_100005152	F039992	GGAGG	VSLDEIHDLREKFGSMSERLARMEERQVTLIGMVERSLSSFGDLSNRVTSLEHLKTKMLLVAGSIGAIVSVVWDAIRSRLTNGG
Ga0208465_100005153	F003112	N/A	MIKPLAIWLTNLSLRFLMTQKEYACFKEALRFAGENNTVARETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES
Ga0208465_100005160	F010603	AGGAG	MASEFQRSPIKAKNKAVRIDGQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0208465_100005161	F004760	AGGAG	MPIYQYEDTRNGSVVELEKPVAERDSVPGYLKRFQVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSRYTPDNIKRAAAQRR
Ga0208465_10000519	F053126	N/A	VENPPEELPEKSKNGKVAFTKEIEEKCLAACSSGFTLEKCAGLVGVPVGTIKTWVHRNPAFGRKMETARKNHELKLLRDIELAGEKSWQAKAWMAERVYSYAQPSARLQVSGGVEHTAGGSFAALLAGLASRRAEKKAQVIDSQEVKQIEDVKGKYNSYCATDSPQPIATTMPKNPGKPRPLRMRRRKPRQESLKKWPVHDTPTPTPPATDSHA