Scaffold Ga0208465_1000023

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1000023
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61094
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (56.60%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004134	Metagenome / Metatranscriptome	451	Y
F004898	Metagenome / Metatranscriptome	419	Y
F005727	Metagenome / Metatranscriptome	392	Y
F027765	Metagenome / Metatranscriptome	193	Y
F030059	Metagenome / Metatranscriptome	186	Y
F048261	Metagenome / Metatranscriptome	148	Y
F071163	Metagenome / Metatranscriptome	122	N
F085168	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_1000023100	F048261	GAGG	MTEPLNHKLDVSKIKTIKDVKNVFECMSLYANASEGYEKYELIKEYFTIPDEPQELKLELPRKSLEEISQEFDEKIDKQIEDVEYKFAQLKYYQEYQFSKKITRIIEDIEYARKNGSFPAKLDYSKLTATSGNITSSFVIKEGGKEVGYYTFGNGYLKYYMNKKPTAISRWFMKNCLSFVWVDT
Ga0208465_1000023104	F071163	GGA	MNKTQSALERVIIELDSWCDNWTPTSYNDPRISLRQIADRARDVLEQEKNDL
Ga0208465_1000023105	F030059	GGAG	MNDTINKNLTLIQEVATKALEEHKNSTERFGGVNYANLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDLQDYMLEYLKDNLPNNLGWSIYVELDW
Ga0208465_100002326	F005727	GGA	MMRTLTRSRSPEFHRATMLRLVIGGTLLWLLWEPIRPVRVVTADALSTAADLIAR
Ga0208465_100002346	F027765	N/A	MNDEDITQFINAFEDFMKHYEVEQFNHEAWVCAQKYTEDLYEQKAAELEITVDYYIQEFV
Ga0208465_100002349	F000744	GGA	MGEITVNLNVHEMGVILSALQNLENVDEHRIAREYGSVPALYDKLYSYWEQMDRSQTGIRNDVVPSF
Ga0208465_100002358	F004898	AGG	MDLSELIEELREIEIYGSEPADWMGYLYDDDSWVPDHELAY
Ga0208465_100002379	F085168	AGTAGG	MIRKIRILLWKIVSDWEQRLYPYEKEDTGDYYYTVKNEETGESYMIIEWIKSFDERIQRLQDEMLWVLTEIRELKK
Ga0208465_100002388	F003331	N/A	MTEKDKIFHNVWCCAYRRRYAAKLKQDWELYKREHQTLLMCLKIAKWTTFDSEKPHYLK
Ga0208465_100002396	F004134	N/A	MTNHPTKDWDFDDTIEDAFQEWFNDLCGGFSFRSEWFFGDAEVEDVKTRQDLMYKWLHSAFVVGYNSGRLEGTKVGLTNND