Scaffold Ga0208598_1004256

Overview

Basic Information

• Taxon OID: 3300020568
• Scaffold ID: Ga0208598_1004256
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2789
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F014228	Metagenome	264	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208598_10042563	F009600	N/A	MRILDPRQLSYKVVVGKVPSLNAFYASKHWTVRAKAKTKHCQEVTLQLAEYDLEQITDVHILCRVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRTYVQSLKMVHDKTITKDTAEITFTGMVVSE
Ga0208598_10042564	F011218	N/A	MQYYTNPAKRRKIDFILEECATLMSNCEASYNARQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN
Ga0208598_10042566	F014228	N/A	MNSKLNPNRLAMWILPMVAATLAALSSCASVKPVLQSVIVRDTVIVTETKYLTDTLEIYKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKERKQRGWTLEGGLTMLGLILLGAYIVKRWIDRLT