Scaffold Ga0208598_1000202

Overview

Basic Information

• Taxon OID: 3300020568
• Scaffold ID: Ga0208598_1000202
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19139
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (20.93%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F014839	Metagenome	259	Y
F021096	Metagenome / Metatranscriptome	220	N
F040589	Metagenome / Metatranscriptome	161	Y
F053984	Metagenome / Metatranscriptome	140	N
F062696	Metagenome	130	N
F064517	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208598_100020211	F040589	N/A	MSIAQTAILASALKGGGSSTPKSQPTSFSESIAQKPIQWLIVGGVVAYAVSKIVGKVVKTAGERSQETAETTTSSDNPWSYKAFLSQNIPAGTNLLTAAKSYAEAKKVYDSLNTYFVDDADIVVGVFAALPSKVQVAQVVQAFETYYKRNMLQYLQEGKKTFDFGSGGLSDALYTRIIENVKRKPKF
Ga0208598_100020213	F021096	GGAGG	MAAVVSPIINYFLKNNLCKDYTAIEGEMSTLVTLNFPNTGNYQQAYYFASQTMLDGQNCTITALEIVPSTELVTLPTGQTNVDSSILPNGVLYVSNLKRQIIAQIPLTTLVRTNNNGKPTYVWFNDQVWQNCYVEFTSTGFTTTTTPLTFRVYYVNKQKN
Ga0208598_100020220	F014839	N/A	MYSPKMIPTNEQRIAQMMANENILLSDKLIKLEVENKEMFSRYHKLRRAFNELLEIHDDLRERSGLDYSDKYDWCDKAGLLDDVE
Ga0208598_10002023	F006345	N/A	MDNKTAKQIVNEALNIAISKGCFGLVEVTNIVEAIKTINAEEHSEFSEITED
Ga0208598_100020231	F053984	N/A	MENQIIPTENAAVSVASQITNFAELVALSTALEKMEQVLTLTAEYIELEKPAESFRGIYIGTQTMHITDKVTGEEKSMDAVRFLINKQVFINAGVVLVNEIKRAAVTIGTPVEITYLRKEGNTKIYQVTLLG
Ga0208598_10002026	F062696	N/A	MKTYGTIRIFCICIVGIYLNSCSPQYRLQRLLKNHQYLYENFRYDSIRIENAVVQDSLFFFTKEKDTLYFNNATIYRNADTLRLVQSCPPCTTTITKQILQPTKEYFKEKRYERSLREKLEDAIFPFVIGMLVCALIIKK
Ga0208598_10002029	F064517	N/A	MARTRTENLYYGKSQQIEADGCFAISFFRPSTSNPVQVNGIPLEAGQTLSIKQNVGDEDWSTYELVFYSGTATNEMHVTKIMPIK