Scaffold Ga0208598_1000057

Overview

Basic Information

• Taxon OID: 3300020568
• Scaffold ID: Ga0208598_1000057
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41212
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (72.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030020	Metagenome	186	Y
F045574	Metagenome	152	N
F085386	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208598_100005711	F085386	GGAGG	VNLFDHAEAQRRKEVGKALAADRRHELLATARGFAAFIAREYGTVTADDVAELMAANNLDYADLGNAAGSVFDAKFQWTGRVIPSKRPSTHGRLIREWSLA
Ga0208598_100005718	F045574	N/A	MPRHANLPFHLYVHVDNRALGPTMPAGTTRAIWHAVYARPAQIVMAHVLLETGAEWCGIPLHQLASDPKAFERDETAFGTCAGDLQPWGAMGECIEAVHMHYLEGLLTMGSGVGPGFTGRHTGIVIDWADGFSRYPQEHKPLNLVERWDGRFLLYPNNYCRFFDKHFTSEKRSDDLKHYRRGERVYWEE
Ga0208598_100005746	F030020	N/A	MMRWLAILVLCGCNPVARISNHANAIRTEAQALEEHGQATGDSVVVAGAQRIDGLAAGIHDELPNVTNKVPAWLSTLQWWGIAVAVVAVAFVLWQSGAFTAIRIAVGWLPRRKVAQAELALDTLDESRPESARELVAALRSQDAEIDAAYRKAQKRRKTQE