Scaffold Ga0208222_1004262

Overview

Basic Information

• Taxon OID: 3300020566
• Scaffold ID: Ga0208222_1004262
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3559
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F007026	Metagenome	359	Y
F020342	Metagenome / Metatranscriptome	224	Y
F076006	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208222_10042621	F007026	N/A	MEQTKKYPVIDWTKREYHQLQLVVDALKAICAREDKRHQMDEHLDPHTRDVIDEVIGMLEDEIDYDPTPNESGEPPMTMDEMHTAAWKEHLAMHS
Ga0208222_100426210	F076006	N/A	MYFHLPSNLQQELLAYDPKLKALVKEQEPKKTTKKAKYPLGNI
Ga0208222_10042624	F001120	N/A	MSNKKSHVSFDKTIAGFNVTERGVRSYSKSIKLGPLQVTLNAHESGVRGTISIPGTGLSIPSIKLF
Ga0208222_10042626	F020342	N/A	MSAYVDYLNMFDRINLAACAKRRASANVLDETRFNGEYDTARLWMKYRLIKTTHHSYVED
Ga0208222_10042627	F001807	GGAGG	MTVLAIEDTYFTQTHVTVTAVVDDMRLLYRATRFDPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDQLDPLWQLLDLSDYE