Scaffold Ga0208222_1003772

Overview

Basic Information

• Taxon OID: 3300020566
• Scaffold ID: Ga0208222_1003772
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3839
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003687	Metagenome / Metatranscriptome	473	Y
F021097	Metagenome	220	Y
F035274	Metagenome	172	Y
F059883	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208222_100377210	F059883	N/A	MGALMDQTEDNKRYHLIITVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLAFQEDGPAFVDSLATKVANTF
Ga0208222_10037724	F021097	N/A	MSNSFKDSCVALVIGIGSGLLLSTGIQKLLNQHYEEHCNARPNHNLVRTQGFLGDTYYCIHSKYL
Ga0208222_10037725	F003687	GGAG	MTPKAVEQLLTQDARLLARRDSPAIDQEIEEQRQAALQLFFQWQDGLAQFQDLVPFCVILQHKVDLNRDLLRWERRHED
Ga0208222_10037726	F035274	N/A	MSLTVGKEELDSALAVFKIEHYYLEFDGNTVYIQWVATTSQAREYIDAFLECLDVLIDERWVDTYGSHERGNPVQLPDEDYICCRYILETV