Scaffold Ga0208222_1000349

Overview

Basic Information

• Taxon OID: 3300020566
• Scaffold ID: Ga0208222_1000349
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13307
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (52.08%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000919	Metagenome / Metatranscriptome	834	Y
F014121	Metagenome / Metatranscriptome	265	Y
F025022	Metagenome / Metatranscriptome	203	Y
F035276	Metagenome / Metatranscriptome	172	Y
F037722	Metagenome / Metatranscriptome	167	Y
F048267	Metagenome / Metatranscriptome	148	Y
F099175	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208222_100034912	F000345	N/A	MNELGKSLKEWWDSDACKKLQKDMEESVQKSVGKYFMLSEDEKLDMVQAICYIMCKAEQAGTSHRGLQDALGIYPAGFWISELMDVHNSLYSYYHDKKQNEELEKDIEVLQKFTET
Ga0208222_100034916	F025022	N/A	MELTVVAIKREDCLYHFDHPHNDTVEELLLNGTEEAIDEHCYFKTGKYPIEGDEVEISLFLEEPADYDTLLVKEVSDEEGTTYTDTTMCVPVWLCPWLQGYFGKVPEEIYIKVRPINKGLEAFVKATGMRQFLN
Ga0208222_10003493	F099175	N/A	MVIEGKSMIQNIEELMLLEHHQELKQFAEYLGVDYEDYLEFLHPDVDFDDISR
Ga0208222_100034936	F000919	GAGG	MRFRNIEFRWSKCNNKYELVKWYQSNGSGQENCYVIAFFDKDKECYNMRTIGDRFFEDKDAWVVGKYGLEFLNEIFEIERIEEELK
Ga0208222_100034942	F037722	GAG	MTKHEIVETIGFYIFVGLMGWALVSFFSLTWAQALIISWMYNKLIDVLQ
Ga0208222_100034944	F014121	GGAG	MTDAAYKVWEAFKAELIVEPTDDMKEALATAIRVISSIIHRDGVLENEPWHLHIAQELNEISYDVEAL
Ga0208222_100034947	F035276	GGAGG	MSKSYISCYNNETKELEHFEVSYSIFVYIRQLEEEIKYASGGVKRLYPFRFGDEE
Ga0208222_100034948	F048267	GGAG	MTNEEWETALKSMNENVKKWVDEEIDKIKYNIIKDIINEDLE