Scaffold Ga0208222_1000012

Overview

Basic Information

• Taxon OID: 3300020566
• Scaffold ID: Ga0208222_1000012
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55693
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (51.25%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F036765	Metagenome / Metatranscriptome	169	Y
F048940	Metagenome / Metatranscriptome	147	Y
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081258	Metagenome / Metatranscriptome	114	Y
F084145	Metagenome / Metatranscriptome	112	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208222_100001234	F048940	N/A	MEKQFFIKFISLIDEVQGKSKLPSQINSTRKSAWVKQTQNPRQKKDALSRV
Ga0208222_100001235	F015080	GAGG	MKEIIPSTNFIPSVPDTEMFDQLQFQPHLNGIPGAIAARHKFENDWEISVVAGPGLYGKVEDETFEVGIFRPNGNMTEDVCGWNTKQEVSAMMWVLSQL
Ga0208222_100001236	F084145	N/A	MFVSCPVSFDLIDAEWYDDIDEAKEDALDWSVELSGENVIVYEAINNEGDYSFNKLYSIC
Ga0208222_100001243	F101038	N/A	MELTNSFPPVDAFFEFSNKKLKEFNYVKFGENVIKFSATSYAVLVGVVSYVWTAFQLWWDDNGETVQVNTIRFVVNVIDFIAAVVITIPKLYRWTQLNINRLVDSMFFQVALA
Ga0208222_100001246	F027828	GGA	MMALTIETMIDTVLMTEELLNEKQLTALRDMLYHYKEFQMELYNYPEENTLFTQSQREIFDIFDIK
Ga0208222_100001254	F081258	N/A	MTFTFPRLSSGIYEVQKDSNTVGFIRKASASKWIVVDVVDTPQHVTKTLKDAKDACINLIIFDTVDNTVETEYNESVQDEKVNENLNNTLEGSLHCYKQIPGTDEFEEVCPTTFGFSVPTLEPIEF
Ga0208222_100001256	F013631	AGGA	LVDLNTVFNYTASRWDWQDGNVNQMWIQEIEESPDCYRYVAVAYNPRKNTSMVMSEPRCYADTLNWVRSFCASFCILPEYC
Ga0208222_100001264	F073458	N/A	MSAKLIAIASEIVDTNPAGAQLIVNLTKAETGAELIEALDNYDSTVLENYTQPVDLEDDGYVSLTDADGTVTYV
Ga0208222_100001265	F053990	N/A	MMYSSSQGGFKMIDTCVLHDDYEDFANKYLGIDYDDFVTFQLGLPDEDEIEIEYPVIA
Ga0208222_100001277	F036765	GAGG	MTIKATELLKLFSKAKQLDLSVEVCEDKDGDYVIRIFEMFRTENFDETVFINQQGETNWNKASYTIDGMIDILDEQLEEKRQEKIKEQKRQELLARLTDFEKDLLGVK