NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208222_1000012

Scaffold Ga0208222_1000012


Overview

Basic Information
Taxon OID3300020566 Open in IMG/M
Scaffold IDGa0208222_1000012 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55693
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (51.25%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013631Metagenome / Metatranscriptome269Y
F015080Metagenome / Metatranscriptome257Y
F027828Metagenome / Metatranscriptome193Y
F036765Metagenome / Metatranscriptome169Y
F048940Metagenome / Metatranscriptome147Y
F053990Metagenome / Metatranscriptome140Y
F073458Metagenome / Metatranscriptome120Y
F081258Metagenome / Metatranscriptome114Y
F084145Metagenome / Metatranscriptome112Y
F101038Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208222_100001234F048940N/AMEKQFFIKFISLIDEVQGKSKLPSQINSTRKSAWVKQTQNPRQKKDALSRV
Ga0208222_100001235F015080GAGGMKEIIPSTNFIPSVPDTEMFDQLQFQPHLNGIPGAIAARHKFENDWEISVVAGPGLYGKVEDETFEVGIFRPNGNMTEDVCGWNTKQEVSAMMWVLSQL
Ga0208222_100001236F084145N/AMFVSCPVSFDLIDAEWYDDIDEAKEDALDWSVELSGENVIVYEAINNEGDYSFNKLYSIC
Ga0208222_100001243F101038N/AMELTNSFPPVDAFFEFSNKKLKEFNYVKFGENVIKFSATSYAVLVGVVSYVWTAFQLWWDDNGETVQVNTIRFVVNVIDFIAAVVITIPKLYRWTQLNINRLVDSMFFQVALA
Ga0208222_100001246F027828GGAMMALTIETMIDTVLMTEELLNEKQLTALRDMLYHYKEFQMELYNYPEENTLFTQSQREIFDIFDIK
Ga0208222_100001254F081258N/AMTFTFPRLSSGIYEVQKDSNTVGFIRKASASKWIVVDVVDTPQHVTKTLKDAKDACINLIIFDTVDNTVETEYNESVQDEKVNENLNNTLEGSLHCYKQIPGTDEFEEVCPTTFGFSVPTLEPIEF
Ga0208222_100001256F013631AGGALVDLNTVFNYTASRWDWQDGNVNQMWIQEIEESPDCYRYVAVAYNPRKNTSMVMSEPRCYADTLNWVRSFCASFCILPEYC
Ga0208222_100001264F073458N/AMSAKLIAIASEIVDTNPAGAQLIVNLTKAETGAELIEALDNYDSTVLENYTQPVDLEDDGYVSLTDADGTVTYV
Ga0208222_100001265F053990N/AMMYSSSQGGFKMIDTCVLHDDYEDFANKYLGIDYDDFVTFQLGLPDEDEIEIEYPVIA
Ga0208222_100001277F036765GAGGMTIKATELLKLFSKAKQLDLSVEVCEDKDGDYVIRIFEMFRTENFDETVFINQQGETNWNKASYTIDGMIDILDEQLEEKRQEKIKEQKRQELLARLTDFEKDLLGVK

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