Basic Information | |
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Taxon OID | 3300020566 Open in IMG/M |
Scaffold ID | Ga0208222_1000012 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 55693 |
Total Scaffold Genes | 80 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (51.25%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
Associated Families | 10 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013631 | Metagenome / Metatranscriptome | 269 | Y |
F015080 | Metagenome / Metatranscriptome | 257 | Y |
F027828 | Metagenome / Metatranscriptome | 193 | Y |
F036765 | Metagenome / Metatranscriptome | 169 | Y |
F048940 | Metagenome / Metatranscriptome | 147 | Y |
F053990 | Metagenome / Metatranscriptome | 140 | Y |
F073458 | Metagenome / Metatranscriptome | 120 | Y |
F081258 | Metagenome / Metatranscriptome | 114 | Y |
F084145 | Metagenome / Metatranscriptome | 112 | Y |
F101038 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208222_100001234 | F048940 | N/A | MEKQFFIKFISLIDEVQGKSKLPSQINSTRKSAWVKQTQNPRQKKDALSRV |
Ga0208222_100001235 | F015080 | GAGG | MKEIIPSTNFIPSVPDTEMFDQLQFQPHLNGIPGAIAARHKFENDWEISVVAGPGLYGKVEDETFEVGIFRPNGNMTEDVCGWNTKQEVSAMMWVLSQL |
Ga0208222_100001236 | F084145 | N/A | MFVSCPVSFDLIDAEWYDDIDEAKEDALDWSVELSGENVIVYEAINNEGDYSFNKLYSIC |
Ga0208222_100001243 | F101038 | N/A | MELTNSFPPVDAFFEFSNKKLKEFNYVKFGENVIKFSATSYAVLVGVVSYVWTAFQLWWDDNGETVQVNTIRFVVNVIDFIAAVVITIPKLYRWTQLNINRLVDSMFFQVALA |
Ga0208222_100001246 | F027828 | GGA | MMALTIETMIDTVLMTEELLNEKQLTALRDMLYHYKEFQMELYNYPEENTLFTQSQREIFDIFDIK |
Ga0208222_100001254 | F081258 | N/A | MTFTFPRLSSGIYEVQKDSNTVGFIRKASASKWIVVDVVDTPQHVTKTLKDAKDACINLIIFDTVDNTVETEYNESVQDEKVNENLNNTLEGSLHCYKQIPGTDEFEEVCPTTFGFSVPTLEPIEF |
Ga0208222_100001256 | F013631 | AGGA | LVDLNTVFNYTASRWDWQDGNVNQMWIQEIEESPDCYRYVAVAYNPRKNTSMVMSEPRCYADTLNWVRSFCASFCILPEYC |
Ga0208222_100001264 | F073458 | N/A | MSAKLIAIASEIVDTNPAGAQLIVNLTKAETGAELIEALDNYDSTVLENYTQPVDLEDDGYVSLTDADGTVTYV |
Ga0208222_100001265 | F053990 | N/A | MMYSSSQGGFKMIDTCVLHDDYEDFANKYLGIDYDDFVTFQLGLPDEDEIEIEYPVIA |
Ga0208222_100001277 | F036765 | GAGG | MTIKATELLKLFSKAKQLDLSVEVCEDKDGDYVIRIFEMFRTENFDETVFINQQGETNWNKASYTIDGMIDILDEQLEEKRQEKIKEQKRQELLARLTDFEKDLLGVK |
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