NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208718_1100598

Scaffold Ga0208718_1100598


Overview

Basic Information
Taxon OID3300020565 Open in IMG/M
Scaffold IDGa0208718_1100598 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000211Metagenome / Metatranscriptome1583Y
F019954Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0208718_11005981F019954N/AMSCIYKVFEYLKQLWMGIWQHTHTVTTTEVSPDLGELAEIL
Ga0208718_11005982F000211N/AMPYIYEVFEHLKQLWMGIWQHTHTVTTTEESPDMGEFTEILDDLSVEMISLRYR
Ga0208718_11005983F000211N/AFEHLKQLWMGIWQHTHTVTTTEVSPNFGEFTEILDDVSVEMIPLRYC

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