Scaffold Ga0208718_1046225

Overview

Basic Information

• Taxon OID: 3300020565
• Scaffold ID: Ga0208718_1046225
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 835
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208718_10462252	F000263	GAGG	MNQEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQEELSEEAMDSMVRTECEGRLDTLTELYNLTYQLSFAIGERQGQK
Ga0208718_10462253	F001019	AGG	MTHYEPSLEILEMEYSCSPGGVDTFEVYDKSDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR
Ga0208718_10462254	F001781	GGAG	MKPADKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGMGFSLEYGAEQHNDDVLEWMMNR