Scaffold Ga0208718_1021290

Overview

Basic Information

• Taxon OID: 3300020565
• Scaffold ID: Ga0208718_1021290
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1314
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001897	Metagenome / Metatranscriptome	620	Y
F005503	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208718_10212901	F005503	GGAG	MTSSEIGLFIFMVVACILWAICSYAVGYKEGHKDGYQRGKAVGRHASGQAVR
Ga0208718_10212902	F001897	AGGCGG	MAFMDSYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAAIDYAHGFLAAYSEKMRRWMVEDTCTSALMRVMALVMGGTEKATKEVMALVKTETPAADHDYWTTKFGDVPSYKTREEAEEADETGWAVNGVPMCAHGSMRWNQSKPDAPKAWAGYFCSEKIKEKQCKPAWYVLTSDGTFKPQV
Ga0208718_10212904	F000403	GGA	MSDYIEIIHPQSMTAKLLCNGVLVEEYKIEQCDKCSQLRRLDQFGYQKGYDRTENIIWFCGDCR