Scaffold Ga0208718_1013687

Overview

Basic Information

• Taxon OID: 3300020565
• Scaffold ID: Ga0208718_1013687
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1659
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011152	Metagenome	294	Y
F016529	Metagenome	246	Y
F028163	Metagenome	192	N
F039127	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208718_10136871	F039127	N/A	DKRPTVQNMQQVERIDPKIVQDSAVAYDYWNTKHGDVPSFKTREEAEEAGIPTLGVAIDTIKETLGGVQVAAAPLCSHGHMIWREGTAKTGKGWGGYMCSEKVKAKQCAPAWYMLGSDGQWRPQV
Ga0208718_10136872	F028163	GGAGG	MSRVTEMIDVDTMIGRTLIDGKIVAEFKCEQCDHCQRIEILDRAGYQRDVSGEPILWFCSKCRK
Ga0208718_10136873	F011152	N/A	MTISAADEWAIHKRAVDVVFSYSGQLGTTIRYNSKLNNHEQVTEYAESLGAEMIVARYFGLDYDINLSNGKRAADVGQGLEVRWTSYVGGNLIVYPNDRETDIAVLVVGKSPVYHIAGWLPVAFARRKRFKNPRQDSWWVDQANLNPIETLVRSEYATAAI
Ga0208718_10136874	F016529	AGGAG	MPLLRFDCSICKKLYGDGRKEHLITKGAELTMHEWFAQCSGCGAFSVKLVDDGLVAGLE