Scaffold Ga0208718_1003725

Overview

Basic Information

• Taxon OID: 3300020565
• Scaffold ID: Ga0208718_1003725
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3134
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208718_10037255	F105192	N/A	MNIPLTEILITLFAAAISGLLTAQIGARRYKKERIEHRAEKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLSHIEMHSNED
Ga0208718_10037256	F072349	AGGAGG	MDKVLCYSCNKSKNELSAKKSVLLPINLLLCKSCTDNKLEPRWIVILAGRQYGSDHVKEHIAKKKYVGLDITASELLI
Ga0208718_10037259	F066776	AGG	LLHLTEKGVEIFIKRSRTKLQESFWNNYDLVIWKKDSGGYTDVKGMYRKDAWGKAEKISVSREGIWELPKRYVKYFK