Scaffold Ga0208718

Basic Information
Taxon OID	3300020565 Open in IMG/M
Scaffold ID	Ga0208718_1002944 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020565 Open in IMG/M

Scaffold ID

Ga0208718_1002944 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3467
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3467

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001125	Metagenome / Metatranscriptome	769	Y
F002935	Metagenome	519	Y
F003422	Metagenome / Metatranscriptome	487	Y
F006984	Metagenome / Metatranscriptome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208718_10029443	F002935	GAGG	MSYERTKGYTGNILDGKKLAKIANDIYRAQYSNDFSECTVDNLLLIELEEKNVFGDPKYAVICSEGVGWEQDTYGCLEIPTNIGQMGLWNGRVFISVETVKSCQTIFKEDISDYIRTFGSRLDSNCSLWQSKMSVEPVTILG
Ga0208718_10029444	F003422	N/A	MSTDLVSTKYTFACDPDECDCLIELTSSDGFGFPSGVMQITCPCGRKPVLLSVVTDTIAPTTQTKEETMEPTTTPIPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNSRTNSKMIQVLNSKIDTVKDIITEAYADSDDQETLRSIAEALDIPLTRTVEWSASVEVSGTIELDLLSDYDTDIESEITDALYVEAQNGNIEIVDQEVCNVREN
Ga0208718_10029448	F001125	AGGCGG	MGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRITISQMIGDEWASETGWGISVNELADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTTLDAFVAKYSSQLSMV
Ga0208718_10029449	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAMENHGMGDISSMGFPTKIKQVTYSNPVFAFHNIHSYKDEGITDEEYACQPNR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208718_1002944

Overview

Ecosystem & Geography

Associated Families

Sequences