NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208718_1002500

Scaffold Ga0208718_1002500


Overview

Basic Information
Taxon OID3300020565 Open in IMG/M
Scaffold IDGa0208718_1002500 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3710
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F016785Metagenome / Metatranscriptome244Y
F027490Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0208718_10025001F027490GAGMSYGKIINGGASMRKGVSKGINDKLTGHAAENGRRDQVAKAVGNAYTVNTVSSQHTNGVKNGGKFTKPSNTSKNYAL
Ga0208718_10025002F001059AGGAMATYDIDSLKEDLPTAKELAQFVYDKTGVSLDLLGKKKEEQYIVAKNALEGKKIPSEYATDDNPYVDKKDQIPCDPVRALPKRNIDLPDEGALVHFFGATNMPHPLDPQSDKKVGINFKKYDNGAITYQVMGPLEQVPVGQKVNKYGQTIPEKYSWIDPRTEELLMRRPDGTFTEKGRGLYSYLVGEKGGGVWPLIDRNITSISQKNIADPWA
Ga0208718_10025005F016785AGGAMLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSELDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPVTQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMASEESEMMQEPTGDELQDALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTP
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