Scaffold Ga0208719

Basic Information
Taxon OID	3300020564 Open in IMG/M
Scaffold ID	Ga0208719_1000256 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 30JUL2009 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020564 Open in IMG/M

Scaffold ID

Ga0208719_1000256 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 30JUL2009 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16239
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16239

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F023592	Metagenome / Metatranscriptome	209	Y
F029049	Metagenome / Metatranscriptome	189	Y
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208719_100025610	F002269	AGGAG	MKEQALAAAKSYGRAAVASVAALYMSGITDPKVLANAFIAGLIGPLLKALQPSEKQLGVGAK
Ga0208719_10002565	F029049	GAGG	MAMCTMSRLAKVVLDRSQEITAHRVGLERTIVRNANPSDASNYGQVYKNWHELVWQEAESAAAEIAVANYFGDYGFTPAIDNAHDTADVGDNIEVKWTKHSNGHLILQNRGPGRPNDVAILVTGFSPVYVLLGWMPVHMAKQPRYKHPHQNNFWVPRSSLFEMQYLKRSNYGDV
Ga0208719_10002566	F066777	AGG	MGELTFIKDGLATTIHDNGDMTVVAAKQCDECFTWQTDLGGFNVRDVSGEVVLWLCALCR
Ga0208719_10002567	F007029	AGGAG	MSFLDNYEDVNARIKRFRSEHPSGRLIAFIDSFDIEKGTILVRAEAYRKYEDQVPSAVDYAFGNVNTYPQNMRKWMVEDTVTSAFGRVIGLLSPSEGGRPTRQDMEKVETLPASADPWSTKASIEDMATMASAVLEIGKELGGELVAEAPRCAHGTMIWAEGTAKATGKPWAAYKCTEKVRSNQCNPYWHVLNSSGKWVPQV
Ga0208719_10002568	F023592	AGG	MNSLDILIALAAAGMGFMFMVLGYSIGYKQGHGEGFLRGRAIAQALRDKELSA
Ga0208719_10002569	F015095	AGG	MERAQLIVGIALGSFTILGLGAGLIRHVVKAYLNELKPDNNGGHNLAGRVERIEQRVDRIYEILLEDRLAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208719_1000256

Overview

Ecosystem & Geography

Associated Families

Sequences