NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208082_1005731

Scaffold Ga0208082_1005731


Overview

Basic Information
Taxon OID3300020563 Open in IMG/M
Scaffold IDGa0208082_1005731 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3138
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004816Metagenome / Metatranscriptome422Y
F010898Metagenome297Y
F023523Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0208082_10057311F010898N/AMDKINIYINSKNRSENENANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIEGFNNMFQIVMCNMNDEITTVYDYTLQDGNPNVNDVRTNLNVLLLNKVVVSYDRIRNKFLYKRTLPITTDNFKMYLRIINSEDFLGFYKNDRNKLILLPYFSNTYSNSIVNISGDEAIIIKIS
Ga0208082_10057312F004816N/AMKFIKYKQVARITLYGFDDLYRDNNSSVFTEPLNSEYFRNNLNAGVQVGNNAKRMRFQIKGLDNVKLSEHARFCIESLKVPFLYDANNDVKSIGQTIVRMSNLSSINCFDTHGNGQTDPVIFTGQTQTSQQRLGTTTTNRIYQNYELSQIFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFADAEYIDLATDQEYFDLFHISFIVYDLDEEELLLTSTQDVDFKKFGETLPRKI
Ga0208082_10057314F023523N/AMISEQSLEGWDNNPVKFSNVKYPQTKDENAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEGQEIPQRIILICSTAHSDSNRVFKSLKNLDWDNDVIEDYNDSLLQDKMEELKYDLDHAKEYKLYKSVYKKFKECKDIDELNDDEMKLLYKFNFVKFQDLEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYATDESYNALVIDATKGRPIFKKNFESILKIN

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