Scaffold Ga0208082_1001929

Overview

Basic Information

• Taxon OID: 3300020563
• Scaffold ID: Ga0208082_1001929
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5845
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033800	Metagenome	176	N
F096647	Metagenome	104	Y
F102565	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208082_10019291	F102565	N/A	MDKRIFKRCPTLGEYHGMALPYVKSQAEYREFYNQHKEMIDMEAIVYSEINEDRKKMGGDKKIHMNEK
Ga0208082_100192914	F096647	N/A	MVWEFLNTKYSGVMIYHQLFNLSDKLMEKFITDRGNGIIEFSRFHHGKDVRTRVNSFLRVDIKKYFDIHDIDIEMYVLEWCRNKSTKVVEM
Ga0208082_100192915	F033800	N/A	MVPEKYPMVSDIKVIDDSYEYHNSTKYNIYLGVTPDELETLRNSDVRDYVEDVSRYVLNGNETLRIIFYNPEHW