Scaffold Ga0208597_1029738

Overview

Basic Information

• Taxon OID: 3300020562
• Scaffold ID: Ga0208597_1029738
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1162
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208597_10297382	F014956	N/A	MINIQDFALNASLSICPNHIVEPLHLKKWWRERGVGELEKYFYTGKKVSYDQEIDWKAISDHKKQMWYDSQNFQIQAGNEYSKRQG
Ga0208597_10297383	F041648	N/A	MENIESTFTNNALTRYYEERIVYLEGENERLRNEARADFLTVLDFWIYAQRTIDTYVIFHKESHHEHYIDVLITMLETLEAHDKKALDTAINNLRIDVIARCKEAITKCQQITAAR
Ga0208597_10297384	F021732	N/A	MNVTKYTCKCTLDKKKGHFVHVIFSHGFGLYGQTSVHSPEDNMEIHGWTFEPEDIDLELYPKITRCNLMPLVAENEMDWTILTNQSL