Scaffold Ga0208597_1015772

Overview

Basic Information

• Taxon OID: 3300020562
• Scaffold ID: Ga0208597_1015772
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1839
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F004666	Metagenome / Metatranscriptome	428	Y
F024786	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208597_10157722	F000263	AGG	MNNEDIGLPPHLQRLVNYDINGLDIMHGELKNLMLIWEKELENAQEAEDESGEAMDSMERTRCEGFLDALTALYQLTYQLSFAIAEKEKRDEARG
Ga0208597_10157723	F001781	AGGAG	MKPGDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIMEDETYKQKVTIDQMWDNLCEAVSAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEDDEEEKDENE
Ga0208597_10157724	F000441	AGGAGG	MKMSDNYINDQLSRAQELLWGGSETENIEAHNIISKLIRDRIEQVEG
Ga0208597_10157725	F001019	AGG	MSHYEPSLEILEVNYSCSPGGVDTFEVYDKGDNAGIMDIPIYETESLTEAVQYCYNLGKDFIVRTYAEWEMRELASL
Ga0208597_10157726	F024786	GGAG	LPVYRVFGTKYTNYYTIIEAADQFEAVDKANALPELEWDSIPTDDVIEATDVYLNEDTSEEIQLNI
Ga0208597_10157727	F004666	AGGA	MTTKREYLVSKGITVGRRGRFSSAANKALQDAAAQGVVFQAEKPTPKK