Scaffold Ga0208597_1003259

Overview

Basic Information

• Taxon OID: 3300020562
• Scaffold ID: Ga0208597_1003259
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5428
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029440	Metagenome	188	N
F072344	Metagenome	121	N
F084222	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208597_10032592	F084222	AGGA	MSRELYLSRLALEIEKYEEKGNVRKAQELHNYFLKVANIRDLDPEAFADDYREEQDLMPKLNEEYYGEYQDNPDEDIVDDSLGSDMYDHDVNEFKNDTSSNAMNLINSLREELQHNDLALKIIDILEEELD
Ga0208597_10032596	F029440	GGA	MYDLAVKNNKFIHIAPRDLKKKDIDWKMRPICDRINASDYCWTVFCCQGHFSGNQKGGLPYLVLLCVNEKRPDVLNKLYSAFEVDEKYDDRLPLCGPRSNMMLISMGVKDENFTYVTIHFNAQGKNDQDYCVKIMDRFSRTI
Ga0208597_10032598	F072344	N/A	MYRVYLNKCHCKLIIKTLDLHKTIIKGEINKISSLMIENKKTQIKYNYDFEESFTFRAHSFFNLLCDLEEEHVKRYFNVLQLYPRSDIIVGVKKKLYLLIGFLSGDSCDVLPVSFSSDEVSVIKLSLELYSNLLCGKFEILSKVFEGLRVSLNFESIISSLCENRDLFTNLVDKNSPLNISSNLIYYKGKWAWDMLGVLRGSEFEKIGSIPLIKIEEVDDSRRIRY