Scaffold Ga0207934_1029294

Overview

Basic Information

• Taxon OID: 3300020561
• Scaffold ID: Ga0207934_1029294
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 935
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F001460	Metagenome / Metatranscriptome	690	Y
F005504	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207934_10292941	F001460	GGAGG	MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDHTD
Ga0207934_10292943	F000868	GAGG	MSSFLENENQMLIDAIYSEIGEQLVEDWVNSNLDEGQLYADWCVADMSNSNYLKGRFNQFYNLTPTDNYYLQWDEEA
Ga0207934_10292944	F005504	N/A	TILTKLSNLVPNCLLTLEFEEETGWGGEYEIVRGEVKELLEYENRCYACQSFDTLSYCENDCGEFCLECGEGSWQNEVEMAECQTHMVVLANQKTYTQEEALNV