NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207934_1006682

Scaffold Ga0207934_1006682


Overview

Basic Information
Taxon OID3300020561 Open in IMG/M
Scaffold IDGa0207934_1006682 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1834
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050934Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0207934_10066822F050934N/AVYTLPISTFEGDACYACPTNKERNSIQAGIFQKHIQATHPNVTCNEMPPEHTLIIEGNITSSIRSTKRQRIDRHLRNRIITSCGDANVMMGSKHIDPALCLYKGAYLICIDNKHLTDKVPRGNGTICRVLGFKLIENAQSYQCKNYYANKVWTVSATDVEWVECEHVNKTSLLLQLETQITELKRQLDLPQNDHQSEQERIKSNLDDLNNKLAKELIGRRFKLEPEQFSPEVTVKLYNAFSKKAVFRCKMIQIPANSNDATTGHKLQGMSKDVIIVSSWPTGSLAAMFKNWEYVVLSRVRTLSGLYMVKPIDMNKSFQPSPQLASYMDKIRKYETDMLSQRQQAITKTFSN

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