Scaffold Ga0207934_1000257

Overview

Basic Information

• Taxon OID: 3300020561
• Scaffold ID: Ga0207934_1000257
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7980
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F012447	Metagenome	280	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207934_100025710	F001805	AGGA	MAKSKEEQIFIGVDDQIVELVGSDKEAFIADQKATADAQALLEAEYKAKQDSRESAIKKLAEIAGLTKDELNAIL
Ga0207934_100025711	F028786	AGCAGG	MNLMQSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKTK
Ga0207934_100025713	F018353	AGG	MSKPKAKKTVIELPDVMASELVQIINTAHEEGKLITGFVCCLEMFDGKKKTIKIAANADMPQHSVFGIINYAAEKYQFTLAPDEDEDDDFYDPNWFDGQ
Ga0207934_100025714	F014609	N/A	MINELIGIIGLLVTILVLTIKATAEIIKMKSQLFPNGGSSLADKVTRLQLDVVKIRSTIDSISSELGKPKRKR
Ga0207934_10002574	F008811	AGGA	MATTILSGRQLILSVNGNSYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGATPNSLYQVLWNGTETAPDTTIAFIMTLRTGVTLTGFVLPQYPSVTGSGADVQTCSVSLQVVGIPTEDLTA
Ga0207934_10002575	F008616	AGG	MLKLQISWELETGEKFDEWTRPIELAMAEKELYNNKSIVRVLMDESTPSNQLLLFLGHKIQQRVTKKVESFDVWKTKVISIAASDFETANFTKPKVLGEQQ
Ga0207934_10002576	F012447	GAG	MAKQIQIVKVDKDYRGLLRAFSKMDDIAKNDMKKIAQDLAERGANYAKGAANNAPYNVKQAVAVAESIKISKSDKAPSFSIGGNRKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSSKGGKEGWWLYRAMSRFQPTIAQEWLQGFEKVRDAWKASL
Ga0207934_10002578	F023328	N/A	MTVYTPTYRVTIAGTVQTSTTLEDATITYGRNDFFEATQPSYCNLELLNLEGTSPVVELLDTIIIEVTDSTGAYVKLFTGEVSGVYNRFAGAGLGGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARITRILEETLYTAWEDISNTFTWNDFTTETWANYGVQGIDTIDAGRYEVLARPAQVEQAYNLTDVTQQSGLGYLYDTTDFKIGYADAERRSENYAANLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLQVEAQNDTSINNYGLLQEVRSTILAETADATEQATNFVNYRGTPKASLEEVTVNLAHSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIPEGYFEGFCEGWTWTLGRNNLELAMSVSNSIYSTLSIQWEDYNALIQWQNLANDYRWLDVI