Scaffold Ga0207934

Basic Information
Taxon OID	3300020561 Open in IMG/M
Scaffold ID	Ga0207934_1000033 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020561 Open in IMG/M

Scaffold ID

Ga0207934_1000033 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32774
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (27.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32774

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (27.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025278	Metagenome / Metatranscriptome	202	N
F025648	Metagenome / Metatranscriptome	200	N
F032560	Metagenome / Metatranscriptome	179	Y
F054663	Metagenome	139	N
F054853	Metagenome	139	N
F086624	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207934_100003315	F054853	N/A	MEEEVKPDAEPIEELEWEDAESTTRSDLISCAYYAINAVDEIDLTLISKIEGNKIKKIRRQSLEIIAEVINELHAEMFDTEEDI
Ga0207934_100003319	F032560	N/A	MQQTYQDLEEGMQNLLPMERQMLLAKVYHYAWYNEEAYKELLTFINHWEKHSEFKAVFFNQDSEESTNQI
Ga0207934_100003320	F086624	N/A	MTEVKKESFGAWINKTKDGKEVIKFTINGQRYNMWVNSYKDKNSQPDYKIYEDNYVAPTGQVQETKSLTDDDLF
Ga0207934_100003323	F025648	GGA	LPNGLISKEDLPIIEAFKGDKLNLISPVTLRENLAYIFTLIGLTRLPDVTELEVIEDYIRTTYPFFTIQEMRIAFKMAVQGKFDCNIEHYEKFSPKYISGIMNAYKSKANQVRKNIPPPPEEPVKQLTEDEIVEFTKQEWLSGKREDFNRLFNADKVFMILMKQGKISFTNEQIMETIKVVSDDNLYRLNRMHPKDAKEFSKQIKNEDFIELQCKKLALVKYFENLSS
Ga0207934_100003327	F054663	GGA	MEIKKEHREWLIANISNFESAKNGFIRNLELNDLKMYEHIYRSYLDPNFIVSVWCGSCKFEMIMKLYKWFEKQ
Ga0207934_10000334	F025278	N/A	MTIFLTIVFLVHLISWVLYQKHQFKERDLYEIKPQEAYEQNKKWHFWKGINHISVYVLVWSLYGFWSMFLFATAFWFGFDILCNVIVLKRPAFYVGVTADTDKFIRKVAELIKIKPEYTSALIKILILTILLILK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207934_1000033

Overview

Ecosystem & Geography

Associated Families

Sequences