Scaffold Ga0208852_1016313

Overview

Basic Information

• Taxon OID: 3300020560
• Scaffold ID: Ga0208852_1016313
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F010534	Metagenome / Metatranscriptome	302	N
F036561	Metagenome / Metatranscriptome	169	N
F042163	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208852_10163131	F042163	N/A	MNLTVMITEQVEKKLEAVLKGKYDNRTIWMYYKASLQMLRDILENLIVCHHTTHSLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPS
Ga0208852_10163132	F010534	AGAAGG	MSDKVGEKQEAIMNLIDQQIKESLKDQASRLEILQDRIKDAIDISTTEHSQGIKQVMLFVTKAHVQAWITSLKHKVDTAGDCEICDLEKILGEESLEIAEAVKVALSNRNEETRNRILGELLEKTITKIEALSVRVSPAPQL
Ga0208852_10163133	F007918	AGAAG	MCDTTLEESDPFLNLELDIEAGIKQELLSILANVETVTEAMNKAILKEEDRREQFRILCSSIDYLFGENIKVIEKRKDDLEEIDPSLHSIACKLSTRMERLRNVAIKPDLKSMKTGMRRVLSQQRIEKLQTNPQQEEQRPQKG
Ga0208852_10163134	F036561	N/A	RKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQSITVAEEKADLPESLEVV