Scaffold Ga0208852_1009607

Overview

Basic Information

• Taxon OID: 3300020560
• Scaffold ID: Ga0208852_1009607
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2038
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017597	Metagenome / Metatranscriptome	239	N
F022147	Metagenome / Metatranscriptome	215	N
F024477	Metagenome / Metatranscriptome	205	Y
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208852_10096071	F017597	N/A	MKIFRSEKLLIKLAIKRKELIKIVKSSKSTLIKTEMITRILITALKARQVIAIRFQVNQTNNLQIWGQNPNILST
Ga0208852_10096072	F024477	N/A	VSYDIIKNSSKASSLELLIKNITLVERVEDFYKELDQITSYRFNCHGKPDPDIYFMKDIIKIRLMELEKFQTQRIKELIKNRFYEDL
Ga0208852_10096074	F039941	N/A	MDIETLALRLEEIKLNRLEVLEEKKVLAEELLDGRLRIQLKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYRQQSS
Ga0208852_10096076	F022147	GAG	MQHEKDEYIFRLVTRVVKEIDSSEICRKREIFKILAKPEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKTGDLIKKESYPLQEVITSYNKKCRIQKSKDIVTLEKVSIANKLLIKTLSEETRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSGLQLEAKSRQWSNEYQE