NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208852_1009549

Scaffold Ga0208852_1009549


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1009549 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2046
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010598Metagenome / Metatranscriptome301N
F067403Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208852_10095491F010598N/AKHIKIHRRFGKVHKICLTKCIPNPLSSIQRLYENLKEKLKDLKCHKYVITNPYRHLYCCPEHYDVTYYGNILRCQNAANSCLIKTLKAAAAILKVEKIIGLSCKEKRRGYPDHMIDSVHFKQRFYLRAAQSLCKIVSEKSSSC
Ga0208852_10095492F067403N/AMLIFIKLTVIFQLTKIKNFLSEYAVELAATDFDKIYSRNGAVQYEDYTVIHHSGTFHANSFRKLCINDYTTPFRVTKNMNLTDIFTTYSIQEAWVDLYRSKVSGLLLDKTDYPPVTITVDAEIDAARVHTPAAGSIPNNVLETHYVLGSTRATIVPSSGKTMSFFYKPVYNTSIETIADGLASIIPHMSSVMCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLFKALIIEWKFKENAIPIAVPNNYTVNMSLDVDDVVRENLINCRRQMQNLKQGFRFITDPIDLALLMFEHDLLLAEIKSIRQDILTPLTNPLSLIDLNNLDEASGTNPTLLKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKVTLMDYLTLGISTFLALGFLIQCSMVTANTFMRWRAERDERIREQERYRFRVNRIERSQPPIRETVLPTCENCSEKREMYRTRPPSKVIKRSHRNKGHIPSHLRGSKLDMNQ
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