Scaffold Ga0208852_1005599

Overview

Basic Information

• Taxon OID: 3300020560
• Scaffold ID: Ga0208852_1005599
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2830
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003626	Metagenome / Metatranscriptome	476	Y
F028170	Metagenome / Metatranscriptome	192	Y
F073547	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208852_10055994	F003626	N/A	MKEFIAKYQKAIVGTGAVSVLIVCYFQQKELSKLRSEQIKVYNIPHNVDSLMNIADSLNDELFMSKVQNGKYELSLEHLYEINPKAGKEFSDYMENETE
Ga0208852_10055998	F028170	N/A	MALKKLMKGLEASLKVEREIHPKTMLGMWFHNFKMRNIEYRINDIKKELNNRKTKK
Ga0208852_10055999	F073547	N/A	MGVPKTPRRLTEIELGDILSAEELDSIPAEVRLAISESIKSSEGYGEGGSTTTGQSYKPIDYDDFPIGMYMINKTGRSSSAYFRISDEFQVKQDEALALVERLGFVEIFNKSLFMNSGHFENKIYEKVFDDGIVLLMIDSIAKKWGASVSKSYRADRGINISLCSNASPKDFDKITSQFTPLAKKRIERENNIALVIQTNRGYDTTSFELPKQKLDIELGYGKSFKPIHEKIIHKLNEKKSK