NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208852_1005330

Scaffold Ga0208852_1005330


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1005330 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2906
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011064Metagenome / Metatranscriptome295N
F017099Metagenome / Metatranscriptome242N

Sequences

Protein IDFamilyRBSSequence
Ga0208852_10053303F017099N/AMEFIEHISVGFWKNFDSILQTKEPTRNELFYALAALQHDILQCYRKIIDHVDNPSQVLDLRDEASAILSQIIRCHRAKGVHFQLYYDTPKPWSKPSHKKLIDFSMALSLIQMSHKRTNNEPGSEFEASQIVDDNFIRLLSEILRFILAWTIPLTLREIALHKYFKLDPVGYEHDKNQKIGLFDSSPVVDSIENRVSIRMEELMRQGENILVSIPKPEDPNRAQTLVEERKKLESPSNWFVWE
Ga0208852_10053304F011064N/AMARESVLDSFWQEFSAIEWTSDMSLGDLFDVSLWTHKLCASLCDLHMISQAPRISEYDMNTVAANILGYVFNIYRCKMDQLNINLEIDQHWVNYETQRDSEILKSIKRLQEILIANKIMTNEGSDRLRQSSTLCRYRADIQSDQDLGYELSCVLQFITIKTQLTLRQLAFLRLKIINPILFERQRVEKIGLFKPADSPASSPETEIEPPSKKAKK
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