Scaffold Ga0208852_1004448

Overview

Basic Information

• Taxon OID: 3300020560
• Scaffold ID: Ga0208852_1004448
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3264
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019779	Metagenome / Metatranscriptome	227	N
F040464	Metagenome / Metatranscriptome	161	N
F043229	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208852_10044482	F040464	N/A	MNPTVNPEWLRRGYAFVGQTQEHLKDVLKELTLKMRTMTDKEIERDLRKGLKVTGDITLELSRFVRQGLEQKRTFKGLLGTLIETKNWALIRLILEVTEELKERSSSSSLLFSIAKEILRELQRIQATIPIKELEQMETSLINIQYWKLTRHLRI
Ga0208852_10044484	F043229	N/A	MTQKGVKVEIETIEECGCEPHECYCRRNIEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIDLCQSINKLKIIHPDWEMDLENSKNHYLCRCRSCLEKRKMYQQTLDETSLEKSTPYKGSRNKISN
Ga0208852_10044486	F019779	N/A	MKDHPAIDFRPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIINRGSDFIIHGLENLDEQLDIIATQIDTENQIEEILKNIRKGFSIIDDIILYATTFINEASKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI