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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020560 Open in IMG/M |
| Scaffold ID | Ga0208852_1004404 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3287 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007918 | Metagenome / Metatranscriptome | 342 | Y |
| F008991 | Metagenome / Metatranscriptome | 324 | N |
| F010534 | Metagenome / Metatranscriptome | 302 | N |
| F017436 | Metagenome / Metatranscriptome | 240 | N |
| F017786 | Metagenome / Metatranscriptome | 238 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208852_10044042 | F017786 | N/A | MDKGVKFVMNREEMKSLSARQILIAKEKLEHGEHVLLVNEIFISPISFQNAMEIVRNIKEKVKLRESELQF |
| Ga0208852_10044044 | F017436 | N/A | MDGQYRKMFRETVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIAPLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKALKDMYYFMNRLKSTTFDEWKNFLITGSTEFFDNRF |
| Ga0208852_10044045 | F008991 | N/A | MNLTVKITEQVEKKLEAVLKGRYDNRTIWMYYKVSLQMLRDIIENLVSCHHTTYTLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLKSPIVIQFCEENGWAV |
| Ga0208852_10044046 | F010534 | AGAAGG | MSDRIGEKQETIMNLIDLEIKKALKDQASRLEILQDRIKDAIDIGTTEHSQGIKQIMLFVTKAHVQAWIASLKHKVDTAGDCEICDLEKILGEESLEIAEAVKVALNNRNEETRNRVLGELLEKTITKIEALSVRVPQVPQQ |
| Ga0208852_10044047 | F007918 | N/A | GGFTRITRNFIMCDTTLEESDPFLNLELDIEAGINQELSSIKQELLSILTNVETVTEAMNRAILKEEDRREQFRTLCSLIDHLFGENIEMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVATKPDLESMKREMEKVLSQQRIEKFQTNPQQEERRPQKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |