Scaffold Ga0208852_1003893

Overview

Basic Information

• Taxon OID: 3300020560
• Scaffold ID: Ga0208852_1003893
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3536
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208852_10038932	F071222	N/A	MDKEQILKIIFTEEASLYDQAVELRDAFGNEDPATKRAYSQWVVISNLIDRINEETN
Ga0208852_10038933	F015420	N/A	MKRLIKYFTPVGEEQIAFAKALMVVVTAVISIVFLFPLLTLLS
Ga0208852_10038934	F004234	N/A	MNFINLFKRDNTYFSNWKTDYDSDVYIAGTIEPFTYNATETDDEYMSLFILSDANLNLLKSKL
Ga0208852_10038938	F003299	N/A	MKIYKVVFKTFDYWGGPIKLVTRIVEAYDADHVKQLIQKNDDLIILIEEI