NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208852_1003646

Scaffold Ga0208852_1003646


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1003646 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3681
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023058Metagenome211N
F033421Metagenome177N

Sequences

Protein IDFamilyRBSSequence
Ga0208852_10036461F023058N/AMAGVAVVGSGLYDLEIDTGYNWNAFTLDDDPKGTLDSTDYVLDGTDQYASVMDGTIGLTAKRGRANTGDQFPYGTMSFTLNDTYADGVFNPFDTTSPYYDPNDSLPGLAPLRKVRFSRYDSLGVKKYLWVGYIVNFDYTFTLGGLDTVSVTCADFSYQLGQTFLAEWNVTEQLSSDRFDDLLDRPEVDYQGTRSIETGVATLGGAAAWTVANGTSVAGYANKIMEAEQGRIFVNREGTITFQKRIGQVLGVPVAEFHDTNPPTKIGYSAIDIAFQADTVVNRASVAHAGASSPEVAEDLTSQATYLIQTTSITDSLVHNDAAALTLAQYLLNANPEARFNSIGTEFPGTPALDQDTLA
Ga0208852_10036463F033421GAGMADGIETRIEVYGLKEALKELNKIDKSLRREITKDYKKITAGLVADIESAIPLNYPLSGWERSWSLRGSYQVFPWPTEHKVKAYINTKPPKEFRSNTVNLTTFAIKWTGAAASFFDFSTSNRMGAALTAKYGDSSRVVWRQYEAHKEDLNSAMEQLVDRVGKAVGQNLKAQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.