NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208852_1002187

Scaffold Ga0208852_1002187


Overview

Basic Information
Taxon OID3300020560 Open in IMG/M
Scaffold IDGa0208852_1002187 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4879
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F008496Metagenome / Metatranscriptome332Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y
F081267Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208852_100218710F007525AGGAMKTYEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEVERGGEMSLTLPNLVNGELSDEGVTIVRYSDDLEAAGINDDIQLMQFIKTISNSGFEVYRMNPWWEVFAHNEDMGEIYETFYEAVDAGIDHILDDKGW
Ga0208852_10021872F008496AGGAGVDFPIPATITEYKPEYDPKATIVVRKGYYYGTPSDAKYDLENAEDISRAFWRVDALQSTNNSNSKAQDKLKDYLVDNFDEIGEEHANAIANIFGMDLSKEVEVEFNVTIKATVSMPVNEDVSDLSVYDFDIEISSNESKYEILESDADIDSIDERY
Ga0208852_10021874F043404AGGMYQPTKGQKMIDVTDPLLSELADHFVELHGCGGIELEQWETAYQFVKKFYNTEEIVQIIIRDKK
Ga0208852_10021876F030094GGAGMKLRGIFEGTFESVWSMEVPQYDWDTYLEQNPDFDENDRDDIQEMWDYFKSLGCYDEIDDTVDTDVIMTGIETYGVEVEIN
Ga0208852_10021879F081267AGGAGMSYQHHWVVVYDEDWGAFMVDAETTNVMLEEGDGTIYNKTTGHWEFAEEGSEELAEYQRLEEILAYNLTRLDLTAKIG
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