Scaffold Ga0208852_1000467

Overview

Basic Information

• Taxon OID: 3300020560
• Scaffold ID: Ga0208852_1000467
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11236
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010237	Metagenome	306	N
F011919	Metagenome	285	N
F013410	Metagenome	271	Y
F013988	Metagenome	266	Y
F021105	Metagenome	220	Y
F023058	Metagenome	211	N
F027779	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208852_10004671	F021105	AGG	MRNPNEEYDRLHDHMTAIARERDNANRIITTLEKQIEELQDEISLAHEALRRAFPENQA
Ga0208852_100046711	F023058	N/A	MAGVAVVGSGLYDLEIDTGYNWNAFTLDDDPKGTLDSTDYVLDGTDQYASVMDGTIGLTAKRGRANTGDQFPYGTMSFTLNDTYADGVFNPFDTTSPYYDPNNSLPGLAPLRKVRFSRYDSLGVKKYLWVGYIVNFDYTFTLGGLDTVSVTCADFSYQLGQTFLAEWNVTEQLSSDRFDDLLDRPEVDYVGTRSIETGVATLGGAAAWTVANGTSVAGYANKIMEAEQGRIFVDREGTITFQKRIGQVLGVPVAEFHDTNPPTKIGYSAIDIAFQADTVVNRASVAHAGASSPQVAEDLTSQATYLIQTTSITDSLVHNDAAALTLAEYLLNANPEARFNSIGTEFPGTPALDQDTLALLDVGSVINIEKSITTSEGPTQFAQNLTVEGLEHRLTLSAGHAVTYFTAPTTIVYELILNDAVYGTLDEDNVLG
Ga0208852_100046716	F010237	AGG	MPVPNYTDLFNEGYDDLVAKLSTVSGLQVNNDPRNITPPSVFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVTTVVQT
Ga0208852_100046717	F013988	GAG	MAVYSVTQKYLIDNYAVVQLLTDAEIELGASVVLAGVDATFNGTYTVRALPQYLYVGIDTEGDLLYDVNIPIANQVLVAKTADDVARTAASGTLTITQVCTWVTAANLEDWIGIGTATAADAAFLTVCASAASQFCWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA
Ga0208852_10004673	F011919	N/A	MQESEANQMNDLQLFAPSSGLGAYREDIAIDRNTVIISPSAKPTSASAALNALPKSGSKRRRVYEYLKQSGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR
Ga0208852_10004674	F013410	AGGAG	MYPENYSDKYNKVFKEFVDDIMKPPRHPVDRLEDHSILLDELTLMYDAHMTIGGEQNRFNASVIRAAINVILTCTK
Ga0208852_10004677	F027779	N/A	MSVIPANPKIVGSKPYTGNSDGAAAGPRSGTDEWIRQAVKYSNGAIWNNGSWGVRDMKGTPGSLSVHATGRAWDASYRKTDKYPTANRKGAVAFLNIVIANANALGLECVLDYFPQKFGRGWQCTRQAWSNYSKPTIHGAPGGDWHHYEISPAMADSPALVKQAFQRVFGEIPQ