Scaffold Ga0208362_1027667

Overview

Basic Information

• Taxon OID: 3300020558
• Scaffold ID: Ga0208362_1027667
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 996
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F040624	Metagenome	161	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_10276672	F006547	N/A	MKWLLILLLPFSISAQTNDTTCQMVYYQKSLIKKGKVELYGYTSYDLWWADESGMGITITIPNKRKKKKHKH
Ga0208362_10276673	F047676	N/A	MELIITLIVLIIIWCVAFMVGNKQGTNRIINQIKKDGGYYDMEYTSSVYPILEPTSSVNNDTMGSIGSKPKTQTDYQREHAKIPPCVGHELESQKEIEKRDIDFMYKWIREKSGKK
Ga0208362_10276674	F040624	N/A	KSEKLMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLEVLKEKFAKIEKQITKSKNKKDENK