Scaffold Ga0208362_1015460

Overview

Basic Information

• Taxon OID: 3300020558
• Scaffold ID: Ga0208362_1015460
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1497
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F019136	Metagenome / Metatranscriptome	231	Y
F031867	Metagenome	181	N
F062456	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_10154602	F062456	N/A	MVNRIDALAHDDTNDRIIAKSFLENQGWWDIKLGGKYDLDLEVPKFKRGCDIEMINYGMDRFEKHNHFRIPVRKHKYWSELPTYKDKNENEKYNKYHDWYIDYIQFLNNDLTELLWYNWKTIKHYKDNLYIDNTLLKQWSERESSFITIPYNYIKEFSGIKHYKLINGLWTRQIN
Ga0208362_10154603	F013759	N/A	MKIELGFSFLSKRETLLGLQITTHNGVTAQNDTLYSERAVEFSIGIVFAILTIGFVSLGEKLDIPEMDNVKRAMKAFENEMDK
Ga0208362_10154604	F019136	N/A	MSLTISNYKKLEGWSHDYKDFRIGEVRETKTEYSFRVAYNSMPYTIKIFRKGTTTKEYEIVLRDGADITQYGREWIVGRKLKSLELTALIFESLIVKCKPKAKQTQGNINFNNPF
Ga0208362_10154605	F031867	N/A	MKIIYMQRTIEMIVKNNIELSNDSLLKQKPTRVGTHKEQNYLVYEFDNK