NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208362_1013233

Scaffold Ga0208362_1013233


Overview

Basic Information
Taxon OID3300020558 Open in IMG/M
Scaffold IDGa0208362_1013233 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1672
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013526Metagenome / Metatranscriptome270Y
F014849Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0208362_10132331F013526AGGAMKKNVLISFVTEADTDLQAVFNLNKILFQLSDSDLVKFDVFDVVECDGVGV
Ga0208362_10132334F014849AGGMITNLDLIAIIIALLGCLTVMGLFWKQNIAQQKEIRRLRNELRKAFKV

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