Scaffold Ga0208362_1002017

Overview

Basic Information

• Taxon OID: 3300020558
• Scaffold ID: Ga0208362_1002017
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5804
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F016388	Metagenome / Metatranscriptome	247	N
F085599	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_10020172	F001396	GGA	MEAVIVPIVVALITGPVVVVLNKLRSENTSQHAESRDLLQKVANKVDSVGTKLDEHIGWHKGRDI
Ga0208362_10020177	F016388	AGGA	MNNMIAKSLDLGQRLISLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELSADEISKAFGK
Ga0208362_10020178	F085599	AGG	VKKILDYLVDNAWTWAGTGMVLITLSGPTLRQATFLTGAAIMVHSIITFTKKDKNE