Scaffold Ga0208362

Basic Information
Taxon OID	3300020558 Open in IMG/M
Scaffold ID	Ga0208362_1001012 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020558 Open in IMG/M

Scaffold ID

Ga0208362_1001012 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9010
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9010

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F034061	Metagenome	175	N
F060610	Metagenome	132	Y
F100269	Metagenome	102	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_100101213	F024717	N/A	MATPKEISGRIDALFSEWSGGFTPLSFAVLDMRREMYIRIFGTGTSGGSNTAGQKLPTKPYTPAYAKIKAKNGRPPLELTGFLKRSFATDQTSVFAQGFGVAIYIQADESGKVAGLQKLYGPIFQPTKEEQDRMLQLHADLLVEQISNQISKP
Ga0208362_100101214	F034061	N/A	AFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDTMVGAGKYTGIRVTIDPNTESFLNFYLSNFKIDIYTMNTPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMVPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKAKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYNEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
Ga0208362_10010123	F100269	N/A	MESVRTKIVFVGVLIVLLLLLIKTCGNGVESDYRLKHTIYEDSVLIASQKKIIAQGSSDAAKQAQQIAELEVKVKNASEVVKIETRTIIKTQIKLGDTVMVQGKPYIQLPKPFLKTTEWYTIGGMINRLGWLQLDSISIPAKFTYAVGDTMRTGFVNRLLKKKDTVVRLRVDNPNVQVVGLENIYIKQDKKWHQTTAFKLGVGVLIGVAAVSAVK
Ga0208362_10010126	F060610	N/A	MTMDDGRDSTYTTLDQGCVVGIGCKVHTHHHVIKLEPQVVYKSMEKFTIFGKQYCTNQWGQTFEIAADEPVPEPKPMQQFYASDTIQPSTSAFLLAPKPEAKIIIKPRTEFTEYKPTMDAPIMGMLLTFTIYLTVQWAWSSMGAWNNLYSELSACLRSSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208362_1001012

Overview

Ecosystem & Geography

Associated Families

Sequences