Scaffold Ga0208362_1000675

Overview

Basic Information

• Taxon OID: 3300020558
• Scaffold ID: Ga0208362_1000675
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11200
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004840	Metagenome / Metatranscriptome	421	Y
F034575	Metagenome / Metatranscriptome	174	N
F038479	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208362_100067520	F004840	GAGG	MDYEYLITCQYDSEAQPHWEQRYENEFGAWESFFRFTDWGLANEYSTVNLYTPTGKCYTKVFYRDGRVQVKA
Ga0208362_100067537	F034575	GGAGG	MENNTTLDPYLMKQVEMGMDGADILHGHLKTLMYEAEQQLDLCIEAEEYSEEAMDSMARTEASGYLDALSEVYALTYAIAFAKEEVKNRKEILGE
Ga0208362_10006757	F038479	AGGA	MNSLTLEQKIAKAAHMVANGQVVSFRGASADTYIKVERMANRIKQEREFPQCPCGQCD